plotCpghore: The function deals the cpg methylation status
In ritianjiang/MethyAge2: A toolkit to analysis DNA methylation with age
Description
Usage
Arguments
Value
Examples
Description
The function deals the cpg methylation status
Usage
1
plotCpghore(object, cpgFile, win_len, ...)
Arguments
object:
A GRanges object that is the methylation perc file
grAnno:
A GRanges object that is the cpgi&shores file
plot:
... bool, plot or not (default: F)
len:
... int, The length of cpgi you wanna normalized (default: 1000)
win_len:
The slide window (default:10)
Value
A dataframe which contains cpgi & shore methylation status. the
Examples
1
2
data(ExampleCpgPlot)
result<-plotCpghore(testMeatrix,testCPG)
ritianjiang/MethyAge2 documentation built on Dec. 3, 2019, 2:03 p.m.
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Description Usage Arguments Value Examples
Description
The function deals the cpg methylation status
Usage
1 | plotCpghore(object, cpgFile, win_len, ...)
|
Arguments
object: |
A GRanges object that is the methylation perc file |
grAnno: |
A GRanges object that is the cpgi&shores file |
plot: |
... bool, plot or not (default: F) |
len: |
... int, The length of cpgi you wanna normalized (default: 1000) |
win_len: |
The slide window (default:10) |
Value
A dataframe which contains cpgi & shore methylation status. the
Examples
1 2 | data(ExampleCpgPlot)
result<-plotCpghore(testMeatrix,testCPG)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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