findemQTL-method: findemQTL

In ritianjiang/MethyAge2: A toolkit to analysis DNA methylation with age

Description

This function find the potential emQTL by correlation test.

Usage

findemQTL(met, exp, cors = 1, siteFile, qFlag = F,
  method = "pearson")

Arguments

met	a data.frame contains methylation percentation
exp	a data.frame contains gene and fpkm(or some others) The 1st column is the gene names and the last is chrom
cors	a numeric value of numbers of cores you wanna use. (default:1)
siteFile	a dataframe contains the CpG site info
qFlag	logical(default:F). Whether to use FDR correction.
method	whether "spearman" or "pearson

Value

a dataframe contains site location info and potential regulated gene and p-value(or qvalue in fact) and slope

Examples

data("ExampleemQTL")
res<-findemQTL(test[1:20,],chr5,cors = 4,siteFile = siteInfo)
res

ritianjiang/MethyAge2 documentation built on Dec. 3, 2019, 2:03 p.m.