clean_SR_data: Cleaned dataset of Ca2+ Waves in Permeabilized cells.

In rjlopez2/AnlysisOfWaves: Make the Analysis of Ca2+ waves

Cleaned dataset of Ca2+ Waves in Permeabilized cells.

Description

This dataframe contain only the parameters analyzed from Ca2+ waves in permeabilized cardiomyocites.

Usage

clean_SR_data

Format

A data frame with 499 rows and 18 variables:

Fields

Date:

Object of class "character". Date of experiment. Format "%Y%m%d".

Animal_No:

Object of class "factor". The internal animal number identifier.

Animal:

Object of class "factor". Experimental Aninmal used: WT, CPVT, etc.

Experiment:

Object of class "character". Permeabilization and Coverslip ID of experiment eg. P1 CS1, P3 CS2, ...

Linescan:

Object of class "character". Image recording linescan ID of experiment eg. LS1, LS2, ...

Wave_No:

Object of class "character". ID of wave in the recording eg. W1, W2, ...

Treatment:

Object of class "factor". Tretatment used in the experiment eg. cAMP, Fab, etc.

Condition:

Object of class "factor". The condition in a given treatment used eg. Control, or cAMP, etc.

Inc_time_min:

Object of class "integer". The time in min that last the tretament incubation in a given record.

Cyto_tau:

Object of class "double". Decay time constant calculated from the descending phase of deskewed wave. Units are in ms.

Cyto_DFF0:

Object of class "double". Amplitude of deskewed waves. Units are in DF/F0.

Cyto_Wave_Speed:

Object of class "double". Velocity of Ca wave propagation. Units are in µm/s.

Freq_waves_Hz:

Object of class "double". Frequency of waves observed in a Linescan. Units are in Hz.

For_Analysis:

Object of class "logic". Are this experiment valid for final analysis? default to TRUE since this dataset already exclude no working experiment.

log.Cyto_tau:

Object of class "double". Logarithmic transformation (base 10) of the Decay time constant calculated from the descending phase of deskewed wave. Units are in ms.

log.Cyto_DFF0:

Object of class "double". Logarithmic transformation (base 10) of the Amplitude of deskewed waves. Units are in DF/F0.

log.Cyto_Wave_Speed:

Object of class "double". Logarithmic transformation (base 10) of the Velocity of Ca wave propagation. Units are in µm/s.

log.Freq_waves_Hz:

Object of class "double". Logarithmic transformation (base 10) of the Frequency of waves observed in a Linescan. Units are in Hz.

Source

Department of Physiology, University of Bern

rjlopez2/AnlysisOfWaves documentation built on Sept. 15, 2022, 2:25 p.m.