superplot_func: Superplot with violin and scatter plot
In rjlopez2/AnlysisOfWaves: Make the Analysis of Ca2+ waves

superplot_func

R Documentation

Superplot with violin and scatter plot

Description

Make a violin and scatter plot with aggregated data at different levels (animal, cell or waves). The layers are constructed in this order: (wave/cell) violin layer -> (wave/cell) small dot layer -> (Animal) large dot layer. Note: this function is depending on other functions to build the multiples layers up.

Usage

superplot_func(
  dataset,
  yaxe,
  xaxe = "Animal",
  base_violin = "cells",
  dot_layer = "cells",
  animal_layer = TRUE,
  wave_size = 2,
  wave_alpha = 0.4,
  cell_size = 2.5,
  cell_alpha = 0.4,
  animal_size = 5,
  animal_alpha = 0.6,
  base_font_size = 15,
  jitter_width_wave = 3,
  jitter_width_cell = 3,
  jitter_width_animal = 3,
  ...
)

Arguments

`dataset`	A dataframe object. The dataset for analysis, eg wave kinetics or wave occurrence df.
`yaxe`	A string. The variable name of interest to plot.
`xaxe`	A string. The dependent variable for piloting. set to default to `"Animal"`.
`base_violin`	A string. Which base plot would you like to plot as a violin plot?. Options are: 1. `waves`, 2. `cells`. Default to `cells`.
`dot_layer`	A string. Which data would you like to see in the next layer?. Options are: 1. `waves`, 2. `cells`, 3. `waves_and_cells`, 4. `none`. Default to `cells`.
`animal_layer`	A logic value. Would you like to add the Animal dot layer? default to `TRUE`.
`wave_size`	A double. Value assigned to the size of the dots. Default to `2`.
`wave_alpha`	A double. Value assigned to the transparency of the dots. Default to `0.4`.
`cell_size`	A double. Value assigned to the size of the dots. Default to `2.5`.
`cell_alpha`	A double. Value assigned to the transparency of the dots. Default to `0.4`.
`animal_size`	A double. Value assigned to the size of the dots. Default to `5`.
`animal_alpha`	A double. Value assigned to the transparency of the dots. Default to `0.6`.
`base_font_size`	A integer. Modify the size of the fonts. Default to 15.
`jitter_width_wave`	Double. Determine the size of spread of the scatter points for waves.
`jitter_width_cell`	Double. Determine the size of spread of the scatter points for cells.
`jitter_width_animal`	Double. Determine the size of spread of the scatter points for animal.
`...`	Pass additional parameters to the internal plot layers.