alleleFreq: Calculates the count of each allele in the provided vector.
In rmsharp/nprcmanager: Genetic Tools for Colony Management
Description
Usage
Arguments
Details
Value
Examples
Description
Part of Genetic Value Analysis
Usage
1
alleleFreq(alleles, ids = NULL)
Arguments
alleles
an integer vector of alleles in the population
ids
character vector of IDs indicating to which animal each allele
in alleles belongs.
Details
If ids are provided, the function will only count the unique alleles
for an individual (homozygous alleles will be counted as 1).
Value
A data.frame with columns allele and freq. This is a
table of allele counts within the population.
Examples
1
2
3
4
5
6
library(nprcgenekeepr)
data("ped1Alleles")
ids <- ped1Alleles$id
alleles <- ped1Alleles[, !(names(ped1Alleles) %in% c("id", "parent"))]
aF <- alleleFreq(alleles[[1]], ids = NULL)
aF[aF$freq >= 10, ]
rmsharp/nprcmanager documentation built on April 24, 2021, 3:13 p.m.
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Description Usage Arguments Details Value Examples
Description
Part of Genetic Value Analysis
Usage
1 | alleleFreq(alleles, ids = NULL)
|
Arguments
alleles |
an integer vector of alleles in the population |
ids |
character vector of IDs indicating to which animal each allele
in |
Details
If ids are provided, the function will only count the unique alleles for an individual (homozygous alleles will be counted as 1).
Value
A data.frame with columns allele and freq. This is a
table of allele counts within the population.
Examples
1 2 3 4 5 6 | library(nprcgenekeepr)
data("ped1Alleles")
ids <- ped1Alleles$id
alleles <- ped1Alleles[, !(names(ped1Alleles) %in% c("id", "parent"))]
aF <- alleleFreq(alleles[[1]], ids = NULL)
aF[aF$freq >= 10, ]
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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