Description Usage Arguments Value Examples
Part of Genetic Value Analysis
1 |
alleles |
a matrix with id, parent, V1 ... Vn providing the alleles an animal received during each simulation. The first 2 columns provide the animal ID and the parent the allele came from. Remaining columns provide alleles. |
threshold |
an integer indicating the maximum number of copies of an allele that can be present in the population for it to be considered rare. Default is 1. |
byID |
logical variable of length 1 that is passed through to
eventually be used by |
A matrix with named rows indicating the number of unique alleles an animal had during each round of simulation (indicated in columns).
1 2 | library(nprcgenekeepr)
rare <- calcA(nprcgenekeepr::ped1Alleles, threshold = 3, byID = FALSE)
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