examplePedigree: examplePedigree is a pedigree object created by 'qcStudbook'

In rmsharp/nprcmanager: Genetic Tools for Colony Management

Description

Represents pedigree from ExamplePedigree.csv.

id

– character column of animal IDs

sire

– the male parent of the animal indicated by the id column. Unknown sires are indicated with NA

dam

– the female parent of the animal indicated by the id column.Unknown dams are indicated with NA

sex

– factor with levels: "M", "F", "U". Sex specifier for an individual.

gen

– generation number (integers beginning with 0 for the founder generation) of the animal indicated by the id column.

birth

– Date vector of birth dates

exit

– Date vector of exit dates

age

– numerical vector of age in years

ancestry

– character vector or NA with free-form text providing information about the geographic population of origin.

origin

– character vector or NA (optional) that indicates the name of the facility that the individual was imported from if other than local.

status

– character vector or NA. Flag indicating an individual's status as alive, dead, sold, etc. Transformed to factor levels: ALIVE, DECEASED, SHIPPED, UNKNOWN. Vector of standardized status codes with the possible values ALIVE, DECEASED, SHIPPED, or UNKNOWN

recordStats

– character vector with value of "added" or "original".

Usage

examplePedigree

Format

An object of class data.frame with 3694 rows and 12 columns.

Examples

library(nprcgenekeepr)
data("examplePedigree")
exampleTree <- createPedTree(examplePedigree)
exampleLoops <- findLoops(exampleTree)

rmsharp/nprcmanager documentation built on April 24, 2021, 3:13 p.m.