Plot.crossA: Wrapper for crossA

In rmtrane/QualityControl: Plots for reproducibility analysis, such as Bland-Altman for continuous and agreement plots for discrete variables.

Description

For a given dataset and a named vector with variables from that dataset, this function creates crossa plots for all variables.

Usage

Plot.crossA(data, crossAs = NULL, vars = "all", lab1 = "ST",
  lab2 = "QC", cannotgrades = NULL, foottext = NULL, show.plot = FALSE,
  show.progress = TRUE, sep = ".", nes = c("", NA), title2 = "",
  ext.labels = NULL, cex = 1, PLOT = TRUE, mar = c(0, 0, 0, 0))

Arguments

data	dataset that includes columns named <var>.QC and <var>.ST for all <var> in crossAs
crossAs	named vector containing variables from data. Names are used as titles for the plots. If not named, the variable itself will be used.
vars	indicates which variables should be plotted. Default is 'all'
lab1	lab1 in crossa (default 'ST')
lab2	lab2 in crossa (default 'QC')
cannotgrades	Named vector indicating how 'cannot grade' is coded. Names should be identical to names(crossAs)
foottext	foot text for plots (default NULL)
show.plot	logical; should the plots be plotted one by one? (click for next, default FALSE)
sep	separation symbol between variable and QC/ST in data. (default '.')
nes	character vector with strings that should be ignored in right.subset. (default c(”, NA))
title2	character string to use as subtitle for plots
ext.labels	if NULL (default), labels printed in squares. Otherwise, character vector with same length as vars, with strings to be stand-in for labels in squares while actual labels are printed in the lower left corner. If elements are not strings, but TRUE/FALSE, numbers are used as labels for TRUE entries. If simply TRUE, external labels will be used for all variables.
cex	numeric; passed to crossa. Default 1.
PLOT	logical; if TRUE (default), figure is plotted. If FALSE, summary returned without any figures.

rmtrane/QualityControl documentation built on May 5, 2019, 5:54 p.m.