Plot.plotx.sd.Limit: Wrapper for twograders.plotx and sd.plotaLimit

In rmtrane/QualityControl: Plots for reproducibility analysis, such as Bland-Altman for continuous and agreement plots for discrete variables.

Description

For a given dataset and a named vector with variables from that dataset, this function creates twograders.plotx and sd.plotaLimit (when appropriate) plots for all variables.

Usage

Plot.plotx.sd.Limit(data = NULL, plotX = NULL, var.units = NULL,
  vars = "all", lab1 = "ST", lab2 = "QC", sep = ".", nes = c("", NA),
  ranges = c(1, 2, 5), cantgrade = 8888, foottext = "", title2 = "",
  plot.type = c("sd.plotaLimit", "twograders.plotx"), show.progress = TRUE,
  show.plot = FALSE, mar = c(0, 0, 0, 0), CI_use_quantiles = FALSE)

Arguments

data	dataset
plotX	named vector containing variables from data. Names are used as titles for the plots. If not named, the variable itself will be used.
vars	indicates which variables should be plotted. Default is 'all'
lab1	lab1 in crossa (default 'ST')
lab2	lab2 in crossa (default 'QC')
sep	separation symbol between variable and QC/ST in data. (default '.')
nes	character vector with strings that should be ignored in right.subset. (default c(”, NA))
foottext	foot text for plots (default NULL)
title2	character string to use as subtitle for plots
plot.type	character vector specifying which figure(s) to plot. Can be one: "sd.plotaLimit", "twograders.plotx", or c('sd.plotaLimit', 'twograders.plotx') (latter is default)
show.progress	logical; should the variable names be printed when plotted? (defualt TRUE)
show.plot	logical; should the plots be plotted one by one? (click for next, default FALSE)
mar	margin to be passed to plots. Set to c(0,0,0,0) when printing multiple plots to PDF.
CI_use_quantiles	logical; passed to sd.plotaLimit.
var.unit	named vector containing strings to be included as units. Added to the title in parenthesis. Expressions can be included by enclosing in #. For example: #mm^2#. Names of vector should correspond to names of crossA vector, or if crossA vector is unnamed, to elements of crossA.

rmtrane/QualityControl documentation built on May 5, 2019, 5:54 p.m.