motifs_prep: prepare motif index from oRNAment files

In rnabioco/scrapR: scraps output import and processing in R

prepare motif index from oRNAment files

Description

prepare motif index from oRNAment files

Usage

motifs_prep(
 
    rna = "http://rnabiology.ircm.qc.ca/BIF/oRNAment/static/Homo_sapiens_cDNA_oRNAment.csv.gz",
 
    id1 = "http://rnabiology.ircm.qc.ca/BIF/oRNAment/static/Homo_sapiens_string_to_int_ID_conversion.csv.gz",
  id2 = "http://rnabiology.ircm.qc.ca/BIF/oRNAment/static/RBP_id_encoding.csv.gz",
  min_score = 0.5,
  out = "hs_motifs_05"
)

Arguments

rna	cDNA_oRNAment.csv.gz file
id1	string_to_int_ID_conversion.csv.gz file
id2	RBP_id_encoding.csv.gz file
min_score	filtering score threshold, default at 0.8
out	saved file name

Value

motif idx table

rnabioco/scrapR documentation built on Aug. 14, 2022, 9:38 a.m.