parse_saf_pf: Parse SAF annotation file for position factor (pf) values

In rnabioco/scrapR: scraps output import and processing in R

Parse SAF annotation file for position factor (pf) values

Description

Parse SAF annotation file for position factor (pf) values

Usage

parse_saf_pf(file, types = "3'UTR", alt_only = TRUE)

Arguments

file	SAF file used with Scraps
types	filter to only these types of PA sites, set to NULL to use all
alt_only	if TRUE, only keep genes with alternative polyA sites

Value

data.frame with SAF first column and position factor by gene

rnabioco/scrapR documentation built on Aug. 14, 2022, 9:38 a.m.