plot_allelecount_vs_origintime: Plot allele count versus origin time

In robjohnnoble/demonanalysis: Analysis and plotting of demon data

Description

Plot allele count versus origin time

Usage

plot_allelecount_vs_origintime(file_or_dataframe, log = FALSE,
  colour_by = "BirthRate", palette = NA, discrete = FALSE,
  print_plot = TRUE)

Arguments

file_or_dataframe	file or data frame containing columns "Descendants" (or "AlleleCount" in older versions), "OriginTime and "BirthRate"
log	if TRUE then y-axis will be log-transformed (default FALSE)
colour_by	character containing name of column by which to colour the plot
palette	either a brewer palette or a vector of colours (if colour_by is categorical)
discrete	whether to use a discrete or continuous colour scale (default FALSE)
print_plot	whether to print the plot (otherwise the function returns a plot object)

Value

plot object, or plot displyed on screen

Examples

plot_allelecount_vs_origintime(system.file("extdata", "output_genotype_properties.dat", 
package = "demonanalysis", mustWork = TRUE))
plot_allelecount_vs_origintime(system.file("extdata", "output_genotype_properties.dat", 
package = "demonanalysis", mustWork = TRUE), colour_by = "DriverMutations", 
palette = c("black", "blue", "grey", "red"), discrete = TRUE)

robjohnnoble/demonanalysis documentation built on June 30, 2020, 12:47 a.m.