plot_tree: Plot a phylogenetic tree

In robjohnnoble/demonanalysis: Analysis and plotting of demon data

Description

Plot a phylogenetic tree

Usage

plot_tree(edges, output_dir = NA, output_filename = NA,
  fill = "black", display = TRUE)

Arguments

edges	dataframe comprising an adjacency matrix (and optionally including Population column)
output_dir	folder in which to save the image file; if NA then plots are displayed on screen instead
output_filename	name of output image file
fill	fill colour of the nodes (excluding the root, which is always red)
display	whether to display the tree

Value

either an image file or a plot displyed on screen

Examples

edges1 <- data.frame(Parent = c(0,1,1,2,2,3,3), Identity = 1:7, Population = c(2,10,5,10,20,10,3))
plot_tree(edges1)

robjohnnoble/demonanalysis documentation built on June 30, 2020, 12:47 a.m.