fluster_phenobars: Visualize Cluster Phenotypes

In rogerswt/fluster: Fingerprint-based clustering of flow cytometry data

Description

Draw a "phenobar" representation of a cluster phenotype. Bars have a height equalt to the medial value of the parameter and are color-coded. Error flags represent first and third quartiles of the bin centers belonging to the cluster.

Usage

fluster_phenobars(
  fluster_obj,
  parameters = fluster_obj$parameters,
  cluster = 1,
  bin_indices = NULL,
  plot_global_flag = FALSE,
  show_thresholds = TRUE,
  show_sd_fac = TRUE,
  main = paste("Cluster", cluster)
)

Arguments

fluster_obj	An object of type "fluster", the result of running fluster()
parameters	Which parameters to include in the plot (default = all parameters)
cluster	Which cluster to plot.
bin_indices	Instead of bin indices in a cluster, specify them directly.
plot_global_flag	Indicate the global distributions.
show_thresholds	Logical. Show per-parameter thresholds.
show_sd_fac	Logical. Superimpose modified error flags if sd_fac != 1.0.
main	Title of plot.

rogerswt/fluster documentation built on July 21, 2021, 1:04 p.m.