plot_fluster_tsne: plot_fluster_tsne

In rogerswt/fluster: Fingerprint-based clustering of flow cytometry data

Description

Draw a picture of the result of fluster using tsne representation of clusters.

Usage

plot_fluster_tsne(
  fluster,
  markers = colnames(fluster$centers),
  mode = c("global", "per-marker"),
  cex = 20,
  proportional = TRUE,
  emph = TRUE,
  cex.lab = 2,
  highlight_clusters = NULL,
  legend = TRUE,
  show_cluster_numbers = NULL
)

Arguments

fluster	The result of running fluster
markers	Markers to include in the spread
mode	Compute colors using either global or per-marker distributions. Global distributions are color-coded directly by signals produced by the cytometer. Per-marker mode shows colors relative to the positivity threshold for each marker (red colors for above-threshold and blue colors for below-threshold) in units of standard deviation for each marker.
cex	Scale factor for node size
proportional	Logical. Scale by the number of events in the cluster
emph	Logical. Emphasize each blob with a black line.
cex.lab	Scale factor for titles of the individual markers
highlight_clusters	IF not NULL, a collection of cluster indices to highlight.
legend	Logical. Whether or not to draw a legend.

Value

N/A.

Examples

plot_fluster(fluster_obj)

rogerswt/fluster documentation built on July 21, 2021, 1:04 p.m.