plot_fluster_graph: plot_fluster_graph

In rogerswt/fluster: Fingerprint-based clustering of flow cytometry data

Description

Draw a picture of the result of fluster using graph-based representation of clusters.

Usage

plot_fluster_graph(
  fluster,
  markers = colnames(fluster$centers),
  mode = c("global", "per-marker"),
  vs = 10,
  ms = 5,
  log.size = FALSE,
  vertex.frame = TRUE,
  legend = TRUE,
  cex.main = 2,
  cex.lab = 2
)

Arguments

fluster	The result of running fluster
markers	Markers to display in the spread
mode	Compute colors using either global or per-marker distributions. Global distributions are color-coded directly by signals produced by the cytometer. Per-marker mode shows colors relative to the positivity threshold for each marker (red colors for above-threshold and blue colors for below-threshold) in units of standard deviation for each marker.
vs	The max size of nodes in the graph
ms	The minimum size of nodes in the graph
log.size	If true, scale node sizes logarithmically
legend	Logical. Draw color legend.
cex.main	Scale factor for titles of the individual markers.
cex.lab	Scale factor for labels.
vertex_frame	Logical. Should we draw a frame.

Value

N/A.

Examples

plot_fluster(fluster_obj)

rogerswt/fluster documentation built on July 21, 2021, 1:04 p.m.