addPercentMtRibo | Add percentage of mitochondrial and ribosomal transcripts. |
calculatePercentGenes | Calculate percentage of transcripts of gene list. |
exportFromSeurat | Export Seurat object to Cerebro. |
extractMonocleTrajectory | Extract trajectory from Monocle and add to Seurat object. |
getEnrichedPathways | Get enriched pathways based on marker genes from EnrichR. |
getMarkerGenes | Get marker genes for every sample and cluster in Seurat... |
getMostExpressedGenes | Get most expressed genes for every sample and cluster in... |
performGeneSetEnrichmentAnalysis | Perform gene set enrichment analysis with GSVA. |
read_GMT_file | Read GMT file. |
send_enrichr_query | Gene enrichment using Enrichr. |
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