Man pages for romanhaa/cerebroPrepare
Export data for visualization in Cerebro.
| addPercentMtRibo | Add percentage of mitochondrial and ribosomal transcripts. |
| calculatePercentGenes | Calculate percentage of transcripts of gene list. |
| exportFromSeurat | Export Seurat object to Cerebro. |
| extractMonocleTrajectory | Extract trajectory from Monocle and add to Seurat object. |
| getEnrichedPathways | Get enriched pathways based on marker genes from EnrichR. |
| getMarkerGenes | Get marker genes for every sample and cluster in Seurat... |
| getMostExpressedGenes | Get most expressed genes for every sample and cluster in... |
| performGeneSetEnrichmentAnalysis | Perform gene set enrichment analysis with GSVA. |
| read_GMT_file | Read GMT file. |
| send_enrichr_query | Gene enrichment using Enrichr. |
