addPercentMtRibo: Add percentage of mitochondrial and ribosomal transcripts.

In romanhaa/cerebroPrepare: Export data for visualization in Cerebro.

Description

Get percentage of transcripts of gene list compared to all transcripts per cell.

Usage

addPercentMtRibo(object, organism, gene_nomenclature)

Arguments

object	Seurat object.
organism	Organism, can be either human ('hg') or mouse ('mm'). Genes need to annotated as gene symbol, e.g. MKI67 (human) / Mki67 (mouse).
gene_nomenclature	Define if genes are saved by their name ('name'), ENSEMBL ID ('ensembl') or GENCODE ID ('gencode_v27', 'gencode_vM16').

Details

Add percentage of mitochondrial and ribosomal transcripts.

Examples

seurat <- addPercentMtRibo(
  object = seurat,
  organism = 'hg',
  gene_nomenclature = 'name'
)

romanhaa/cerebroPrepare documentation built on Oct. 17, 2019, 4:01 p.m.