read_GMT_file: Read GMT file.
In romanhaa/cerebroPrepare: Export data for visualization in Cerebro.
Description
Usage
Arguments
Details
Value
Examples
View source: R/read_GMT_file.R
Description
This functions reads a (tab-delimited) GMT file which contains
the gene set name in the first column, the gene set description in the
second column, and the gene names in the following columns.
Usage
1
Arguments
file
Path to GMT file.
Details
Read GMT file.
Value
Returns an object in the same format as from the GSA.read.gmt
function (GSA package) with gene sets, gene set names, and gene set
descriptions stored in lists.
Examples
1
2
3
my_gmt <- read_GMT_file(
file = 'path/to/my/gene_sets.gmt'
)
romanhaa/cerebroPrepare documentation built on Oct. 17, 2019, 4:01 p.m.
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Description Usage Arguments Details Value Examples
View source: R/read_GMT_file.R
Description
This functions reads a (tab-delimited) GMT file which contains the gene set name in the first column, the gene set description in the second column, and the gene names in the following columns.
Usage
1 |
Arguments
file |
Path to GMT file. |
Details
Read GMT file.
Value
Returns an object in the same format as from the GSA.read.gmt function (GSA package) with gene sets, gene set names, and gene set descriptions stored in lists.
Examples
1 2 3 | my_gmt <- read_GMT_file(
file = 'path/to/my/gene_sets.gmt'
)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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