Generic plotting function for PKPDsim objects
1 2 3 4 5 6 7 8 9 10 11 | ## S3 method for class 'PKPDsim_data'
plot(x, only_obs = TRUE, obs_x = NULL,
regimen = NULL, lines = NULL, show_single = list(obs = TRUE, spaghetti =
TRUE, ci = FALSE, median = FALSE, regimen = TRUE),
show_population = list(obs = FALSE, spaghetti = TRUE, ci = FALSE, median =
TRUE, regimen = TRUE), ci = c(0.05, 0.95), theme = NULL, xlim = NULL,
ylim = NULL, width = 6, height = 4, legend = NULL,
show_series = NULL, show = NULL, log_y = FALSE, target = NULL,
target_as_ribbon = FALSE, scale_colour_values = NULL,
scale_linetype_values = NULL, labels = list(x = "Time (hours)", y =
"Concentration (mg/L)"), return_svg = FALSE, ...)
|
x |
PKPDsim-simulated x |
only_obs |
Only plot observation compartment |
obs_x |
Also add observation (e.g. TDM) x |
regimen |
regimen specification from PKPDsim::new_regimen() |
lines |
show lines? |
show_single |
definition for plots of single patients |
show_population |
definition for plots of populations |
ci |
confidence interval, specified as vector of two values between 0 and 1, default is 'c(0.05, 0.95)'. |
theme |
theme |
xlim |
xlim passed to ggplot |
ylim |
ylim passed to ggplot |
width |
width of plot if saved |
height |
height of plot if saved |
legend |
list of labels that override defaults, e.g. list("individual" = "ind.pred") |
show_series |
show only specified types / series |
show |
definition of what to show in plot, overrides 'show_single' and 'show_population'. NULL by default |
log_y |
log y axis? |
target |
vector of target values (dependent variable), will be shown as vertical lines |
target_as_ribbon |
show target (only when vector of 2) as ribbon (TRUE), or just as two lines (FALSE) |
scale_colour_values |
values for colour scale |
scale_linetype_values |
values for linetype scale |
labels |
list with 'x' and 'y' labels |
return_svg |
return the svg plot definition instead of ggplot2 object. FALSE by default |
... |
rest |
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