API for ropensci/RNeXML
Semantically Rich I/O for the 'NeXML' Format

Global functions
.cacheNextMethod Man page
.callGeneric Man page
.methodWithNext Man page
.sigLabel Man page
Annotated-class Man page
New Man page Source code
add_basic_meta Man page Source code
add_char Source code
add_character_nodes Source code
add_characters Man page Source code
add_meta Man page Source code
add_namespaces Man page Source code
add_otu Source code
add_rows Source code
add_states Source code
add_trees Man page Source code
add_trees_block Source code
attributes_to_row Source code
c,ListOfmeta-method Man page
c,meta-method Man page
c,nexml-method Man page
c-ListOfmeta Man page
c-meta Man page
cacheNextMethod Source code
callGeneric Source code
character_to_label Source code
characters_to_simmap Source code
classForSig Source code
closure Source code
coalesce_ Man page Source code
expand_prefix Man page Source code
extract_character_matrix Source code
findNextMethod Man page Source code
flatten_multiphylo Man page Source code
format_characters Source code
fromPhylo Source code
get_all_meta Man page Source code
get_by_id Source code
get_char_maps Source code
get_characters Man page Source code
get_characters_list Man page Source code
get_citation Man page Source code
get_flat_trees Man page Source code
get_ids Source code
get_item Man page
get_level Man page Source code
get_license Man page Source code
get_meta Man page Source code
get_metadata Man page Source code
get_metadata_values Man page Source code
get_namespaces Man page Source code
get_otu Man page
get_otu_maps Source code
get_otus_list Man page
get_rdf Man page Source code
get_state_maps Source code
get_taxa Man page Source code
get_taxa_list Man page Source code
get_taxa_meta Man page Source code
get_taxa_meta_list Man page Source code
get_trees Man page Source code
get_trees_list Man page Source code
idRefColName Source code
isEmpty Source code
lcapply Man page Source code
map_chars_to_label Source code
map_state_to_symbol Source code
map_states_to_symbols Source code
meta Man page Source code
methodWithNext Source code
missing_as_na Source code
na_symbol_to_state Source code
name_by_id Source code
name_by_id_or_label Source code
new_otus_block Source code
nexml Man page
nexml-class Man page
nexml.cell Man page Source code
nexml.char Man page Source code
nexml.characters Man page Source code
nexml.edge Man page Source code
nexml.format Man page Source code
nexml.matrix Man page Source code
nexml.member Man page Source code
nexml.meta Man page
nexml.meta_ Man page
nexml.node Man page Source code
nexml.otu Man page Source code
nexml.otus Man page Source code
nexml.polymorphic_states Man page Source code
nexml.row Man page Source code
nexml.seq Man page Source code
nexml.state Man page Source code
nexml.states Man page Source code
nexml.tree Man page Source code
nexml.trees Man page Source code
nexml.uncertain_state Man page Source code
nexml.uncertain_states Man page Source code
nexmlTree Source code
nexml_add Man page Source code
nexml_citation Source code
nexml_figshare Man page Source code
nexml_get Man page Source code
nexml_id Source code
nexml_publish Man page Source code
nexml_read Man page Source code
nexml_read.XMLInternalDocument Man page Source code
nexml_read.XMLInternalNode Man page Source code
nexml_read.character Man page Source code
nexml_schema_validate Source code
nexml_to_simmap Man page Source code
nexml_validate Man page Source code
nexml_write Man page Source code
node_id Source code
nodelist_to_df Source code
optional_labels Source code
otu_list Source code
otu_to_label Source code
read.nexml Man page
recursion Source code
reset_id_counter Man page Source code
reverse_map Source code
sigLabel Source code
simmap_edge_annotations Source code
simmap_to_nexml Man page Source code
slot,ResourceMeta-method Man page
slot-ResourceMeta Man page
slot<-,ResourceMeta-method Man page
split_by_class Source code
standardize_phylo_list Source code
state_to_symbol Source code
taxize_nexml Man page Source code
toPhylo Man page Source code
tree_to_simmap Source code
unique_ids Source code
write.nexml Man page
ropensci/RNeXML documentation built on Dec. 10, 2018, 8 a.m.