toPhylo: nexml to phylo
In ropensci/RNeXML: Semantically Rich I/O for the 'NeXML' Format
toPhylo R Documentation
nexml to phylo
Description
nexml to phylo coercion
Usage
toPhylo(tree, otus)
Arguments
tree
an nexml tree element
otus
a character string of taxonomic labels, named by the otu ids.
e.g. (from get_otu_maps for the otus set matching the relevant trees node.
Value
phylo object. If a "reconstructions" annotation is found on the
edges, return simmap maps slot as well.
ropensci/RNeXML documentation built on Jan. 14, 2023, 4:36 a.m.
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| toPhylo | R Documentation |
nexml to phylo
Description
nexml to phylo coercion
Usage
toPhylo(tree, otus)
Arguments
tree |
an nexml tree element |
otus |
a character string of taxonomic labels, named by the otu ids. e.g. (from get_otu_maps for the otus set matching the relevant trees node. |
Value
phylo object. If a "reconstructions" annotation is found on the edges, return simmap maps slot as well.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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