Files in ropensci/RNeXML
Semantically Rich I/O for the 'NeXML' Format

.Rbuildignore
.circleci/config.yml
.gitignore
.travis.yml
CONTRIBUTING.md
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md R/S4-utils.R R/add_basic_meta.R R/add_characters.R R/add_meta.R R/add_namespaces.R R/add_trees.R R/character_classes.R R/classes.R R/concatenate_nexml.R R/constructors.R R/deprecated.R R/get_basic_metadata.R R/get_characters.R R/get_level.R R/get_metadata.R R/get_namespaces.R R/get_rdf.R R/get_taxa.R R/get_taxa_meta.R R/get_trees.R R/internal_get_node_maps.R R/internal_isEmpty.R R/internal_name_by_id.R R/internal_nexml_id.R R/meta.R R/nexmlTree.R R/nexml_add.R R/nexml_get.R R/nexml_methods.R R/nexml_publish.R R/nexml_read.R R/nexml_validate.R R/nexml_write.R R/prefixed-uris.R R/simmap.R R/taxize_nexml.R R/tbl_df.R R/utils.R README.Rmd README.md
RNeXML.Rproj
_pkgdown.yml
appveyor.yml
codecov.yml
codemeta.json
cran-comments.md
docs/CONTRIBUTING.html
docs/LICENSE-text.html
docs/apple-touch-icon-120x120.png
docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
docs/apple-touch-icon-60x60.png
docs/apple-touch-icon-76x76.png
docs/apple-touch-icon.png
docs/articles/S4.html
docs/articles/index.html
docs/articles/intro.html
docs/articles/intro_files/figure-html/unnamed-chunk-2-1.png
docs/articles/manuscript.pdf
docs/articles/metadata.html
docs/articles/simmap.html
docs/articles/simmap_files/figure-html/Figure1-1.png
docs/articles/sparql.html
docs/articles/sparql_files/figure-html/unnamed-chunk-8-1.png
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/favicon-16x16.png
docs/favicon-32x32.png
docs/favicon.ico
docs/index.html
docs/link.svg
docs/logo.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Annotated-class.html
docs/reference/New.html
docs/reference/add_basic_meta.html
docs/reference/add_characters.html
docs/reference/add_meta.html
docs/reference/add_namespaces.html
docs/reference/add_trees.html
docs/reference/c-meta.html
docs/reference/c-nexml-method.html
docs/reference/coalesce_.html
docs/reference/constructors.html
docs/reference/dot-cacheNextMethod.html
docs/reference/dot-callGeneric.html
docs/reference/dot-methodWithNext.html
docs/reference/dot-sigLabel.html
docs/reference/example.xml
docs/reference/expand_prefix.html
docs/reference/figures/logo.png
docs/reference/figures/logo.svg
docs/reference/findNextMethod.html
docs/reference/flatten_multiphylo.html
docs/reference/get_all_meta.html
docs/reference/get_characters.html
docs/reference/get_characters_list.html
docs/reference/get_citation.html
docs/reference/get_flat_trees.html
docs/reference/get_level.html
docs/reference/get_license.html
docs/reference/get_meta.html
docs/reference/get_metadata.html
docs/reference/get_metadata_values.html
docs/reference/get_namespaces.html
docs/reference/get_rdf.html
docs/reference/get_taxa.html
docs/reference/get_taxa_list.html
docs/reference/get_taxa_meta.html
docs/reference/get_taxa_meta_list.html
docs/reference/get_trees.html
docs/reference/get_trees_list.html
docs/reference/index.html
docs/reference/lcapply.html
docs/reference/meta.html
docs/reference/nexml-class.html
docs/reference/nexml_add.html
docs/reference/nexml_figshare.html
docs/reference/nexml_get.html
docs/reference/nexml_publish.html
docs/reference/nexml_read.html
docs/reference/nexml_validate.html
docs/reference/nexml_write.html
docs/reference/reset_id_counter.html
docs/reference/simmap_to_nexml.html
docs/reference/slot-ResourceMeta-method.html
docs/reference/taxize_nexml.html
docs/reference/toPhylo.html
inst/CITATION
inst/WORDLIST
inst/examples/RDFa2RDFXML.xsl
inst/examples/biophylo.xml
inst/examples/characters.xml
inst/examples/coal.xml
inst/examples/comp_analysis.xml
inst/examples/gardiner_1984.xml
inst/examples/geospiza.xml
inst/examples/jsonld-ex.R
inst/examples/mbank_X962_11-22-2013_1534.nex
inst/examples/merge_data.Rmd inst/examples/merge_data.md
inst/examples/meta_example.xml
inst/examples/meta_taxa.xml
inst/examples/missing_some_branchlengths.xml
inst/examples/multitrees.xml
inst/examples/ncbii.xml
inst/examples/no-base-ns.xml
inst/examples/ontotrace-result.xml
inst/examples/phenex.xml
inst/examples/phenoscape.xml
inst/examples/primates.xml
inst/examples/primates_from_R.xml
inst/examples/primates_meta.xml
inst/examples/primates_meta_xslt.xml
inst/examples/simmap.nex
inst/examples/simmap.xml
inst/examples/simmap_ex.xml
inst/examples/some_missing_branchlengths.xml
inst/examples/sparql.newick
inst/examples/taxa.xml
inst/examples/treebase-record.xml
inst/examples/trees.xml
inst/simmap.md man/Annotated-class.Rd man/New.Rd man/add_basic_meta.Rd man/add_characters.Rd man/add_meta.Rd man/add_namespaces.Rd man/add_trees.Rd man/c-meta.Rd man/c-nexml-method.Rd man/coalesce_.Rd man/constructors.Rd man/dot-cacheNextMethod.Rd man/dot-callGeneric.Rd man/dot-methodWithNext.Rd man/dot-sigLabel.Rd man/expand_prefix.Rd
man/figures/logo.svg
man/findNextMethod.Rd man/flatten_multiphylo.Rd man/get_all_meta.Rd man/get_characters.Rd man/get_characters_list.Rd man/get_citation.Rd man/get_flat_trees.Rd man/get_level.Rd man/get_license.Rd man/get_meta.Rd man/get_metadata.Rd man/get_metadata_values.Rd man/get_namespaces.Rd man/get_rdf.Rd man/get_taxa.Rd man/get_taxa_list.Rd man/get_taxa_meta.Rd man/get_taxa_meta_list.Rd man/get_trees.Rd man/get_trees_list.Rd man/lcapply.Rd man/meta.Rd man/nexml-class.Rd man/nexml_add.Rd man/nexml_figshare.Rd man/nexml_get.Rd man/nexml_publish.Rd man/nexml_read.Rd man/nexml_validate.Rd man/nexml_write.Rd man/reset_id_counter.Rd man/simmap_to_nexml.Rd man/slot-ResourceMeta-method.Rd man/taxize_nexml.Rd man/toPhylo.Rd
manuscripts/.gitignore
manuscripts/Dockerfile
manuscripts/LICENSE
manuscripts/Makefile
manuscripts/README.md
manuscripts/components/comp_analysis.xml
manuscripts/components/elsarticle.cls
manuscripts/components/elsarticle.latex
manuscripts/components/methods-in-ecology-and-evolution.csl
manuscripts/components/references.bib
manuscripts/components/restore-cache.R
manuscripts/components/sup-references.bib
manuscripts/components/trees.xml
manuscripts/manuscript.Rmd manuscripts/manuscript.pdf
manuscripts/manuscript.tex
manuscripts/public-domain-versions.txt
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
tests/spelling.R tests/test-all.R tests/testthat/conversions.R tests/testthat/geiger_test.R tests/testthat/helper-RNeXML.R tests/testthat/test_01_exported_util.R tests/testthat/test_01_utils.R tests/testthat/test_ape.R tests/testthat/test_characters.R tests/testthat/test_comp_analysis.R tests/testthat/test_concatenate.R tests/testthat/test_get_characters.R tests/testthat/test_get_level.R tests/testthat/test_global_ids.R tests/testthat/test_inheritance.R tests/testthat/test_meta.R tests/testthat/test_meta_extract.R tests/testthat/test_nexml_read.R tests/testthat/test_parsing.R tests/testthat/test_publish.R tests/testthat/test_rdf.R tests/testthat/test_serializing.R tests/testthat/test_simmap.R tests/testthat/test_taxonomy.R tests/testthat/test_toplevel_api.R tests/testthat/test_validate.R tests/testthat/test_zzz_cleanup.R tests/testthat/treebase_test.R
tools/README-unnamed-chunk-5-1.png
vignettes/S4.Rmd vignettes/intro.Rmd vignettes/metadata.Rmd
vignettes/references.bib
vignettes/simmap.Rmd vignettes/sparql.Rmd
ropensci/RNeXML documentation built on Jan. 22, 2019, 8:13 a.m.