treeman
package in this package.outsider
package as it has been archived.restez
.There are a lot of CRAN submission problems pointed by Victoria Wimmer and I have no patience to handle them, I am not able to release it to CRAN.
Please add \value to .Rd files regarding exported methods and explain
the functions results in the documentation. Please write about the
structure of the output (class) and also what the output means. (If a
function does not return a value, please document that too, e.g.
\value{No return value, called for side effects} or similar)
Missing Rd-tags in up to 93 .Rd files, e.g.:
addClade.Rd: \value
addNdmtrx.Rd: \value
addTip.Rd: \value
blncdTree.Rd: \value
calcDstBLD.Rd: \value
calcDstMtrx.Rd: \value
...
You write information messages to the console that cannot be easily
suppressed. It is more R like to generate objects that can be used to
extract the information a user is interested in, and then print() that
object.
Instead of print()/cat() rather use message()/warning() or
if(verbose)cat(..) (or maybe stop()) if you really have to write text to
the console.
(except for print, summary, interactive functions)
Please do not modify the global environment (e.g. by using <<-) in your
functions. This is not allowed by the CRAN policies.
Please fix and resubmit.
outsider
integrationoutsider
, reduing user need to install BLAST+db_only
, avoid downloads by fetching exclusively from
restez
databaseSeqRec
restez
txid
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