getNdAge: Get age

In ropensci/phylotaR: Automated Phylogenetic Sequence Cluster Identification from 'GenBank'

Get age

Description

Return the age for id. Requires the known age of the tree to be provided.

Usage

getNdAge(tree, id, tree_age)

Arguments

tree	TreeMan object
id	node id
tree_age	numeric value of known age of tree

Details

Returns a numeric.

See Also

getNdsAge, getSpnAge, getSpnsAge, getPrnt, getAge https://github.com/DomBennett/treeman/wiki/get-methods

Examples

data(mammals)
# when did apes emerge?
# get parent id for all apes
prnt_id <- getPrnt(mammals, ids = c("Homo_sapiens", "Hylobates_concolor"))
# mammal_age <- getAge(mammals)  # ~166.2, needs to be performed when tree is not up-to-date
getNdAge(mammals, id = prnt_id, tree_age = 166.2)

ropensci/phylotaR documentation built on July 9, 2023, 3:17 p.m.