getOtgrp: Get outgroup
In ropensci/phylotaR: Automated Phylogenetic Sequence Cluster Identification from 'GenBank'
getOtgrp R Documentation
Get outgroup
Description
Return the outgroup based on a tree and a vector of IDs.
Usage
getOtgrp(tree, ids)
Arguments
tree
TreeMan object
ids
vector of node ids
Details
Returns a id, character. If there are multiple possible outgroups, returns NULL.
See Also
https://github.com/DomBennett/treeman/wiki/get-methods
Examples
data(mammals)
# orangutan is an outgroup wrt humans and chimps
getOtgrp(mammals, ids = c("Homo_sapiens", "Pan_troglodytes", "Pongo_pygmaeus"))
ropensci/phylotaR documentation built on July 9, 2023, 3:17 p.m.
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| getOtgrp | R Documentation |
Get outgroup
Description
Return the outgroup based on a tree and a vector of IDs.
Usage
getOtgrp(tree, ids)
Arguments
tree |
|
ids |
vector of node ids |
Details
Returns a id, character. If there are multiple possible outgroups, returns NULL.
See Also
https://github.com/DomBennett/treeman/wiki/get-methods
Examples
data(mammals)
# orangutan is an outgroup wrt humans and chimps
getOtgrp(mammals, ids = c("Homo_sapiens", "Pan_troglodytes", "Pongo_pygmaeus"))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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