getSpnsAge: Get age ranges for multiple nodes

In ropensci/phylotaR: Automated Phylogenetic Sequence Cluster Identification from 'GenBank'

Get age ranges for multiple nodes

Description

Return start and end ages for ids from when they first appear to when they split

Usage

getSpnsAge(tree, ids, tree_age, parallel = FALSE, progress = "none")

Arguments

tree	TreeMan object
ids	vector of node ids
tree_age	numeric value of known age of tree
parallel	logical, make parallel?
progress	name of the progress bar to use, see create_progress_bar

Details

Returns a dataframe, parallelizable.

See Also

getNdAge, getNdsAge, getSpnAge, https://github.com/DomBennett/treeman/wiki/get-methods

Examples

tree <- randTree(10)
# all nodes but root
ids <- tree["nds"][tree["nds"] != tree["root"]]
getSpnsAge(tree, ids = ids, tree_age = getAge(tree))

ropensci/phylotaR documentation built on July 9, 2023, 3:17 p.m.