getSubtree: Get subtree
In ropensci/phylotaR: Automated Phylogenetic Sequence Cluster Identification from 'GenBank'
getSubtree R Documentation
Get subtree
Description
Return tree descending from id.
Usage
getSubtree(tree, id)
Arguments
tree
TreeMan object
id
node id
Details
Returns a TreeMan, parallelizable. id must be an internal node.
See Also
getPrnt, addClade,
https://github.com/DomBennett/treeman/wiki/get-methods
Examples
data(mammals)
# get tree of apes
ape_id <- getPrnt(mammals, ids = c("Homo_sapiens", "Hylobates_concolor"))
apes <- getSubtree(mammals, id = ape_id)
summary(apes)
ropensci/phylotaR documentation built on July 9, 2023, 3:17 p.m.
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| getSubtree | R Documentation |
Get subtree
Description
Return tree descending from id.
Usage
getSubtree(tree, id)
Arguments
tree |
|
id |
node id |
Details
Returns a TreeMan, parallelizable. id must be an internal node.
See Also
getPrnt, addClade,
https://github.com/DomBennett/treeman/wiki/get-methods
Examples
data(mammals)
# get tree of apes
ape_id <- getPrnt(mammals, ids = c("Homo_sapiens", "Hylobates_concolor"))
apes <- getSubtree(mammals, id = ape_id)
summary(apes)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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