get_nsqs: Count number of sequences

In ropensci/phylotaR: Automated Phylogenetic Sequence Cluster Identification from 'GenBank'

Count number of sequences

Description

Count the number of sequences in a cluster(s).

Usage

get_nsqs(phylota, cid)

Arguments

phylota	Phylota object
cid	Cluster ID(s)

Value

vector

See Also

Other tools-public: calc_mad(), calc_wrdfrq(), drop_by_rank(), drop_clstrs(), drop_sqs(), get_clstr_slot(), get_ntaxa(), get_sq_slot(), get_stage_times(), get_tx_slot(), get_txids(), is_txid_in_clstr(), is_txid_in_sq(), list_clstrrec_slots(), list_ncbi_ranks(), list_seqrec_slots(), list_taxrec_slots(), plot_phylota_pa(), plot_phylota_treemap(), read_phylota(), write_sqs()

Examples

data("cycads")
# count seqs for a random 10 clusters
random_cids <- sample(cycads@cids, 10)
nsqs <- get_nsqs(phylota = cycads, cid = random_cids)

ropensci/phylotaR documentation built on July 9, 2023, 3:17 p.m.