rmNodes: Remove nodes from a tree
In ropensci/phylotaR: Automated Phylogenetic Sequence Cluster Identification from 'GenBank'
rmNodes R Documentation
Remove nodes from a tree
Description
Returns a tree with a node ID(s) removed
Usage
rmNodes(tree, nids, progress = "none")
Arguments
tree
TreeMan object
nids
internal node IDs
progress
name of the progress bar to use, see create_progress_bar
Details
Removes nodes in a tree. Joins the nodes following to
the nodes preceding the node to be removed. Creates polytomies.
Warning: do not use this function to remove tip nodes, this create a
corrupted tree.
See Also
addTip, rmTips,
https://github.com/DomBennett/treeman/wiki/manip-methods
Examples
tree <- randTree(10)
tree <- rmNodes(tree, "n3")
summary(tree) # tree is now polytmous
ropensci/phylotaR documentation built on July 9, 2023, 3:17 p.m.
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| rmNodes | R Documentation |
Remove nodes from a tree
Description
Returns a tree with a node ID(s) removed
Usage
rmNodes(tree, nids, progress = "none")
Arguments
tree |
|
nids |
internal node IDs |
progress |
name of the progress bar to use, see |
Details
Removes nodes in a tree. Joins the nodes following to the nodes preceding the node to be removed. Creates polytomies. Warning: do not use this function to remove tip nodes, this create a corrupted tree.
See Also
addTip, rmTips,
https://github.com/DomBennett/treeman/wiki/manip-methods
Examples
tree <- randTree(10)
tree <- rmNodes(tree, "n3")
summary(tree) # tree is now polytmous
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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