setPD: Set the phylogenetic diversity

In ropensci/phylotaR: Automated Phylogenetic Sequence Cluster Identification from 'GenBank'

Set the phylogenetic diversity

Description

Return a tree with the phylogenetic diversity altered.

Usage

setPD(tree, val)

Arguments

tree	TreeMan object
val	new phylogenetic diversity

Details

Use this function to convert the phylogenetic diversity of a tree. For example, you might want to convert the tree so the sum of all branches is 1. This function will achieve that by modiyfing every branch, while maintaining their relative lengths.

See Also

setAge https://github.com/DomBennett/treeman/wiki/set-methods

Examples

tree <- randTree(10)
tree <- setPD(tree, val = 1)
summary(tree)

ropensci/phylotaR documentation built on July 9, 2023, 3:17 p.m.