Files in royfrancis/pophelper
Tabulate, analyse and visualise admixture proportions from STRUCTURE, TESS, BAPS, ADMIXTURE and tab-delimited q-matrices files

BinaryFiles
DESCRIPTION
LICENSE.txt
NAMESPACE
NEWS
R/pophelper.R README.md
inst/CITATION
inst/bin/clumpp_linux_1.1.2b_32bit
inst/bin/clumpp_linux_1.1.2b_64bit
inst/bin/clumpp_mac_1.1.2b
inst/bin/clumpp_windows_1.1.2b.exe
inst/bin/distruct_linux_1.1_64bit
inst/bin/distruct_macosx_1.1
inst/bin/distruct_macosx_1.1_2013
inst/bin/distruct_windows_1.1.exe
inst/files/PophelperDemo.R
inst/files/STRUCTUREpop_K4-combined-aligned.txt
inst/files/STRUCTUREpop_K4-combined-merged.txt
inst/files/STRUCTUREpop_K4-combined.txt
inst/files/Structure239_2
inst/files/Structure239_3
inst/files/Structure239_4
inst/files/TESSpop_K5-combined-aligned.txt
inst/files/TESSpop_K5-combined-merged.txt
inst/files/TESSpop_K5-combined.txt
inst/files/admixture/admixture_01
inst/files/admixture/admixture_02
inst/files/admixture/admixture_03
inst/files/admixture/admixture_04
inst/files/admixture/admixture_05
inst/files/admixture/admixture_06
inst/files/admixture/admixture_07
inst/files/admixture/admixture_08
inst/files/admixture/admixture_09
inst/files/admixture/admixture_10
inst/files/admixturegrplabels.txt
inst/files/admixturepoplabels.txt
inst/files/baps/baps_k2-1.txt
inst/files/baps/baps_k2.txt
inst/files/basic/comma/basic-comma-k3.csv
inst/files/basic/comma/basic-comma-k4.csv
inst/files/basic/comma/basic-comma-k5.csv
inst/files/basic/space/basic-space-k3.txt
inst/files/basic/space/basic-space-k4.txt
inst/files/basic/space/basic-space-k5.txt
inst/files/basic/tab/basic-tab-k3.txt
inst/files/basic/tab/basic-tab-k4.txt
inst/files/basic/tab/basic-tab-k5.txt
inst/files/basicgrplabels.txt
inst/files/coords1592.txt
inst/files/coords22.txt
inst/files/coords239.txt
inst/files/coords75.txt
inst/files/faststructure/fast-structure_01.meanQ
inst/files/faststructure/fast-structure_02.meanQ
inst/files/faststructure/fast-structure_03.meanQ
inst/files/faststructure/fast-structure_04.meanQ
inst/files/faststructure/fast-structure_05.meanQ
inst/files/faststructure/fast-structure_06.meanQ
inst/files/faststructure/fast-structure_07.meanQ
inst/files/faststructure/fast-structure_08.meanQ
inst/files/faststructure/fast-structure_09.meanQ
inst/files/faststructure/fast-structure_10.meanQ
inst/files/faststructure/fast-structure_11.meanQ
inst/files/faststructuregrplabels.txt
inst/files/faststructurepoplabels.txt
inst/files/grplab.txt
inst/files/matrix/comma/matrix-comma-k3.csv
inst/files/matrix/comma/matrix-comma-k4.csv
inst/files/matrix/comma/matrix-comma-k5.csv
inst/files/matrix/space/matrix-space-k3.txt
inst/files/matrix/space/matrix-space-k4.txt
inst/files/matrix/space/matrix-space-k5.txt
inst/files/matrix/tab/matrix-tab-k3.txt
inst/files/matrix/tab/matrix-tab-k4.txt
inst/files/matrix/tab/matrix-tab-k5.txt
inst/files/metadata.txt
inst/files/structure-ci/structure_4_f
inst/files/structure-ci/structure_5_f
inst/files/structure/structure_01
inst/files/structure/structure_02
inst/files/structure/structure_03
inst/files/structure/structure_04
inst/files/structure/structure_05
inst/files/structure/structure_06
inst/files/structure/structure_07
inst/files/structure/structure_08
inst/files/structure/structure_09
inst/files/structure/structure_10
inst/files/structure/structure_11
inst/files/structure/structure_12
inst/files/structure/structure_13
inst/files/structure/structure_14
inst/files/structure/structure_15
inst/files/structure/structure_16
inst/files/structure/structure_17
inst/files/structuregrplabels-rep.txt
inst/files/structuregrplabels.txt
inst/files/structuregrplabels2.txt
inst/files/structureindlabels.txt
inst/files/structureindlabelslong.txt
inst/files/tess/tess_01.txt
inst/files/tess/tess_02.txt
inst/files/tess/tess_03.txt
inst/files/tess/tess_04.txt
inst/files/tess/tess_05.txt
inst/files/tess/tess_06.txt
inst/files/tess/tess_07.txt
inst/files/tess/tess_08.txt
inst/files/tess/tess_09.txt
inst/files/tess/tess_10.txt
inst/files/tess/tess_11.txt
inst/files/tess/tess_12.txt
inst/files/tess/tess_13.txt
inst/files/tess/tess_14.txt
inst/files/tess/tess_15.txt
inst/files/tess/tess_16.txt
inst/files/tess/tess_17.txt
inst/files/tess/tess_18.txt
inst/files/tess/tess_19.txt
inst/files/tess/tess_20.txt
inst/files/tess/tess_21.txt
inst/files/tess3.rds
inst/files/tessgrplabels.txt
man/analyseQ.Rd man/checkQ.Rd man/clumppExport.Rd man/collectClumppOutput.Rd man/collectRunsTess.Rd man/distructColours.Rd man/distructExport.Rd man/evannoMethodStructure.Rd man/getColors.Rd man/getDim.Rd man/getOS.Rd man/getPlotParams.Rd man/grpLabels.Rd man/is.qlist.Rd man/plotQ.Rd man/plotQMultiline.Rd man/readQ.Rd man/readQBaps.Rd man/readQBasic.Rd man/readQClumpp.Rd man/readQStructure.Rd man/readQTess.Rd man/readQTess3.Rd man/sortInd.Rd man/summariseQ.Rd man/tabulateQ.Rd man/unitConverter.Rd man/verifyGrplab.Rd tests/testmanual/test-all.R tests/testmanual/testthat.R
vignettes/Joined2Files-20180501215308.png
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vignettes/Joined2Files-20180501215348.png
vignettes/Joined2Files-20180501215620.png
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vignettes/Joined2Files-20180501220336.png
vignettes/Joined3Files-20180501215152.png
vignettes/Joined3Files-20180501215331.png
vignettes/Joined3Files-20180501215333.png
vignettes/Joined3Files-20180501220420.png
vignettes/Joined3Files-20180501220655.png
vignettes/STRUCTUREpop_K4-combined-1.png
vignettes/STRUCTUREpop_K4-combined-2.png
vignettes/STRUCTUREpop_K4-combined-3.png
vignettes/STRUCTUREpop_K4-combined-aligned-1.png
vignettes/STRUCTUREpop_K4-combined-aligned-2.png
vignettes/STRUCTUREpop_K4-combined-aligned-3.png
vignettes/STRUCTUREpop_K4-combined-merged-1.png
vignettes/clumpp-aligned.png
vignettes/clumpp-folder.png
vignettes/clumpp-format.png
vignettes/clumpp-output.png
vignettes/clumpp-unaligned.png
vignettes/destruct-structure.png
vignettes/evanno-plot.png
vignettes/input-preview.png
vignettes/plotq-overview.png
vignettes/plotq.png
vignettes/plotqmultiline-colours.png
vignettes/plotqmultiline-overview.png
vignettes/plotqmultiline.png
vignettes/structure-files.png
vignettes/structure_01.pdf
vignettes/structure_01.png
vignettes/structure_01.tiff
vignettes/structure_02.png
vignettes/structure_03.png
vignettes/structure_04.png
vignettes/vignette.Rmd
vignettes/workflow.png
royfrancis/pophelper documentation built on Aug. 21, 2018, 4:48 a.m.