alignK: Align clusters

In royfrancis/pophelper: Tabulate, Analyse and Visualise Admixture Proportions

Description

Aligns clusters within or across K. This is similar to what CLUMPP does.

Usage

alignK(qlist, type = "auto")

Arguments

qlist	A qlist object
type	A character denoting whether clusters must be aligned within K or across K. Select 'auto', 'within' or 'across'. Defaults to 'auto'.

Details

When 'within' is selected, clusters are aligned across replicate runs within a given K. When 'across' is selected, clusters are aligned across replicate runs within a given K and then across K. When 'auto' is selected, if all runs belong to a single K, clusters are aligned within that K, and if multiple K is present, the 'across' method is used.

Value

A qlist object with clusters switched where necessary.

Examples

sfiles <- list.files(path=system.file("files/structure",package="pophelper"), full.names=TRUE)
slist <- readQ(sfiles)
xlist <- alignK(slist)

royfrancis/pophelper documentation built on Jan. 1, 2021, 4:58 p.m.