Man pages for royfrancis/pophelper
Tabulate, analyse and visualise admixture proportions from STRUCTURE, TESS, BAPS, ADMIXTURE and tab-delimited q-matrices files

analyseQAnalyse STRUCTURE, TESS, BAPS or BASIC text runs. Wrapper...
checkQInternal: Check input filetype.
clumppExportGenerate CLUMPP output from a qlist
collectClumppOutputCollect CLUMPP output files from multiple folders
collectRunsTessCollect TESS cluster run files from multiple folders
distructColoursInternal: Vector of 90 Distruct colours
distructExportGenerate files for DISTRUCT.
evannoMethodStructurePerform the Evanno method for STRUCTURE runs.
getColorsInternal: Generate colours based on number of K
getDimInternal: Get dimensions for figures.
getOSInternal: Find current OS
getPlotParamsInternal: Generate parameters for plots with labels
grpLabelsInternal: Handles grp subset/order
is.qlistVerify if a qlist is formatted correctly.
plotQGenerate barplots from qlists.
plotQMultilinePlot a qlist as individual-level multiline barplot
readQConvert run files (q-matrices) to qlist.
readQBapsConvert BAPS cluster files to qlist.
readQBasicConvert delimited text files to qlist.
readQClumppConvert CLUMPP format numeric text files to qlist.
readQStructureConvert STRUCTURE run files to qlist.
readQTessConvert TESS cluster files to qlist.
readQTess3Convert TESS3 R object to pophelper qlist.
sortIndInternal: Handles individual sorting
summariseQSummarise a tabulated dataframe
tabulateQTabulate runs from a qlist
unitConverterInternal: Convert value between dimension units
verifyGrplabVerify if a grplab dataframe is formatted correctly.
royfrancis/pophelper documentation built on Aug. 21, 2018, 4:48 a.m.