get_counts: Get TSS or TSR count tables.
In rpolicastro/tsrexplorer: TSS and TSR Analysis
Description
Usage
Arguments
Value
See Also
Examples
Description
Extract the TSS or TSR count tables from the 'counts' slot.
Usage
1
get_counts(experiment, data_type = c("tss", "tsr"), samples = "all")
Arguments
experiment
TSRexploreR object.
data_type
Get either TSS ('tss') or TSR ('tsr') count tables.
samples
A vector of sample names to analyze.
Value
List of TSS or TSR count data.frame.
See Also
get_granges to get TSS or TSR GRanges.
Examples
1
2
3
4
5
6
data(TSSs_reduced)
exp <- tsr_explorer(TSSs_reduced) %>%
format_counts(data_type="tss")
cts <- get_counts(exp)
rpolicastro/tsrexplorer documentation built on Oct. 17, 2021, 3:02 p.m.
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Description Usage Arguments Value See Also Examples
Description
Extract the TSS or TSR count tables from the 'counts' slot.
Usage
1 | get_counts(experiment, data_type = c("tss", "tsr"), samples = "all")
|
Arguments
experiment |
TSRexploreR object. |
data_type |
Get either TSS ('tss') or TSR ('tsr') count tables. |
samples |
A vector of sample names to analyze. |
Value
List of TSS or TSR count data.frame.
See Also
get_granges to get TSS or TSR GRanges.
Examples
1 2 3 4 5 6 | data(TSSs_reduced)
exp <- tsr_explorer(TSSs_reduced) %>%
format_counts(data_type="tss")
cts <- get_counts(exp)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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