get_granges: Get TSS or TSR GRanges.
In rpolicastro/tsrexplorer: TSS and TSR Analysis
Description
Usage
Arguments
Value
See Also
Examples
Description
Extract the TSS or TSR GRanges from the 'experiment' slot.
Usage
1
get_granges(experiment, data_type = c("tss", "tsr"), samples = "all")
Arguments
experiment
TSRexploreR object.
data_type
Get either TSS ('tss') or TSR ('tsr') GRanges.
samples
A vector of sample names to analyze.
Value
List of TSS or TSR GRanges.
See Also
get_counts to get TSS or TSR counts data.frame.
Examples
1
2
3
4
5
data(TSSs_reduced)
exp <- tsr_explorer(TSSs_reduced)
gr <- get_granges(exp)
rpolicastro/tsrexplorer documentation built on Oct. 17, 2021, 3:02 p.m.
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Description Usage Arguments Value See Also Examples
Description
Extract the TSS or TSR GRanges from the 'experiment' slot.
Usage
1 | get_granges(experiment, data_type = c("tss", "tsr"), samples = "all")
|
Arguments
experiment |
TSRexploreR object. |
data_type |
Get either TSS ('tss') or TSR ('tsr') GRanges. |
samples |
A vector of sample names to analyze. |
Value
List of TSS or TSR GRanges.
See Also
get_counts to get TSS or TSR counts data.frame.
Examples
1 2 3 4 5 | data(TSSs_reduced)
exp <- tsr_explorer(TSSs_reduced)
gr <- get_granges(exp)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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