peptide_predictions: Peptide Detectability Predictor

In rr-2/PeptideRanger:

Peptide Detectability Predictor

Description

Predicts detectability scores for given peptide(s) using provided RF model.

Usage

peptide_predictions(peptides, prediction_model, missed_cleavages)

Arguments

peptides	list of peptide amino acid sequences of interest.
prediction_model	RF model for used for detectability predictions.
missed_cleavages	list of peptide missed cleavages in same order as peptides. If missing, missed cleavages will be calculated from peptide sequence for model predictions.

Value

dataframe of RF detectability scores with peptide sequences.

Examples

## Not run: 
peptide_predictions(peptides = c("PEPTIDERANGER", "LLYQPILR", "DAASLFGNK"),
                    prediction_model = RFmodel_ProteomicsDB)

peptide_predictions(peptides = "MLAILKAQILLR",
                    prediction_model = RFmodel_CPTAC,
                    missed_cleavages = 2)

## End(Not run)

rr-2/PeptideRanger documentation built on May 27, 2023, 4:43 p.m.