Man pages for rricepackage/rRice
rRice package to make easier the study of the genomic of rice
| addAttribute-methods | Add an attribute to an object. |
| addDBs-methods | Add new DBs at your experiment |
| alreadyUsedDB-function | Function checking if the database is already used |
| analyseDataDB7-function | analyseDataDB7 |
| callCreationGeneDB10-function | callCreationGeneDB10 |
| callCreationGeneDB1-function | callCreationGeneDB1 |
| callCreationGeneDB2-function | callCreationGeneDB2 |
| callCreationGeneDB3-function | callCreationGeneDB3 |
| callCreationGeneDB4-function | callCreationGeneDB4 |
| callCreationGeneDB5-function | callCreationGeneDB5 |
| callCreationGeneDB6-function | callCreationGeneDB6 |
| callCreationGeneDB7-function | callCreationGeneDB7 |
| callCreationGeneDB8-function | callCreationGeneDB8 |
| callCreationGeneDB9-function | callCreationGeneDB9 |
| callDB10-function | callDB10 |
| callDB1-function | callDB1 |
| callDB2-function | callDB2 |
| callDB3-function | callDB3 |
| callDB4-function | callDB4 |
| callDB5-function | callDB5 |
| callDB6-function | callDB6 |
| callDB7-function | callDB7 |
| callDB8-function | callDB8 |
| callDB9-function | callDB9 |
| callExecutablePy-function | callExecutablePy |
| callSnpSeek-function | CallSnpSeek |
| changeDBNameIntoNumber-function | Function to know the number of the database associate to the... |
| changeNumberIntoDBName-function | Function to know the the name of the database associate to... |
| createAttributesVector-function | Function to create the vector of the attributes you want from... |
| createExperiment-function | Function to create an Experiment |
| createNewDB-methods | Add manually a new database read by a file |
| creationGeneDB10-function | creationGeneDB10 |
| creationGeneDB1-function | creationGeneDB1 |
| creationGeneDB2-function | creationGeneDB2 |
| creationGeneDB3-function | creationGeneDB3 |
| creationGeneDB4-function | creationGeneDB4 |
| creationGeneDB5-function | creationGeneDB5 |
| creationGeneDB6-function | creationGeneDB6 |
| creationGeneDB7-function | creationGeneDB7 |
| creationGeneDB8-function | creationGeneDB8 |
| creationGeneDB9-function | creationGeneDB9 |
| databasesAvailables-function | Function to know the number of databases availables |
| databasesList-function | Function for see the list of the databases we can call |
| deleteAttribute-methods | Delete an attribute which has been add by the user. |
| dlPythonModules-function | dlPythonModules |
| existsGene-function | Function that allows to know if a gene already exists or not |
| Experiment-class | An S4 class to represent an Experiment class. |
| Funricigenes2-class | An S4 class to represent the Gene database Funricigenes 2 |
| Funricigenes3-class | An S4 class to represent the Gene database Funricigenes 3 |
| Funricigenes-class | An S4 class to represent the Gene database Funricigenes |
| Gene-class | An S4 class to represent a Gene. |
| getAttributes-function | Function for see the list of the attributes of the class |
| getAttributesNames-methods | Get the attribute names of an object. |
| getDate-methods | Get the date of an object |
| getDBGenes-methods | Get all the genes of the data base you want. |
| getGenesIds-methods | Get a list of ids (RAPDB or MSU) |
| getGenes-methods | Get the genes of an object |
| getId-methods | Get the id of an object |
| getIds-function | getIds |
| getLocus-methods | Get the locus of an object |
| getName-methods | Get the name of an object |
| getOutPutJSON-function | Function for a JSON return |
| getProperties-methods | get the properties you want to keep |
| Gramene-class | An S4 class to represent the Gene database Gramene |
| IC4R-class | An S4 class to represent Gene database IC4R. |
| id-function | id |
| listDB-function | Function to know the list of the databases availables |
| makeList-function | makeList |
| matchGenes-function | matchGenes |
| MSU-class | An S4 class to represent the Gene database MSU |
| noDoubleIds-function | noDoubleIds |
| Oryzabase-class | An S4 class to represent the third database Gene. |
| PLANTTFDB-class | An S4 class to represent the Gene database PLANTTFDB |
| PLNTFDB-class | An S4 class to represent the Gene database Funricigenes 2. |
| RAPDB-class | An S4 class to represent the first database Gene. |
| returnError-function | Function which returns only the right errors |
| selectGenes-methods | Select the genes you want to keep in your experiment |
| selectProperties-methods | select the properties you want to study |
| setDate-methods | Set the date of an object |
| setName-methods | Set the name of an object |
| updateObject-methods | Update an attribute of an object |
| whichOS-function | Function to know the OS using the package |
