Files in rrrlw/ggtda
'ggplot2' Extension to Visualize Topological Persistence
.Rbuildignore
.gitignore
.travis.yml
CODE_OF_CONDUCT.md
CONTRIBUTING.md
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/barcode.R
R/disk.R
R/draw-key-simplex.R
R/ggtda.R
R/landscape.R
R/persistence-engines.R
R/persistence.R
R/simplicial-complex-engines.R
R/simplicial-complex.R
R/themes.R
R/utils.R
README.Rmd
README.md
_pkgdown.yml
appveyor.yml
codecov.yml
cran-comments.md
docs/404.html
docs/CODE_OF_CONDUCT.html
docs/CONTRIBUTING.html
docs/LICENSE-text.html
docs/articles/grouped-list-data.html
docs/articles/grouped-list-data_files/figure-html/unnamed-chunk-11-1.png
docs/articles/grouped-list-data_files/figure-html/unnamed-chunk-12-1.png
docs/articles/grouped-list-data_files/figure-html/unnamed-chunk-2-1.png
docs/articles/grouped-list-data_files/figure-html/unnamed-chunk-3-1.png
docs/articles/grouped-list-data_files/figure-html/unnamed-chunk-4-1.png
docs/articles/grouped-list-data_files/figure-html/unnamed-chunk-5-1.png
docs/articles/grouped-list-data_files/figure-html/unnamed-chunk-6-1.png
docs/articles/grouped-list-data_files/figure-html/unnamed-chunk-7-1.png
docs/articles/grouped-list-data_files/figure-html/unnamed-chunk-8-1.png
docs/articles/grouped-list-data_files/figure-html/unnamed-chunk-9-1.png
docs/articles/illustrate-constructions.html
docs/articles/illustrate-constructions_files/figure-html/1skeleton-1.png
docs/articles/illustrate-constructions_files/figure-html/2skeleton-1.png
docs/articles/illustrate-constructions_files/figure-html/after-1.png
docs/articles/illustrate-constructions_files/figure-html/after-2.png
docs/articles/illustrate-constructions_files/figure-html/after-3.png
docs/articles/illustrate-constructions_files/figure-html/after-4.png
docs/articles/illustrate-constructions_files/figure-html/before-1.png
docs/articles/illustrate-constructions_files/figure-html/before-2.png
docs/articles/illustrate-constructions_files/figure-html/before-3.png
docs/articles/illustrate-constructions_files/figure-html/before-4.png
docs/articles/illustrate-constructions_files/figure-html/cech-1.png
docs/articles/illustrate-constructions_files/figure-html/cech-2.png
docs/articles/illustrate-constructions_files/figure-html/cech-3.png
docs/articles/illustrate-constructions_files/figure-html/clutter-1.png
docs/articles/illustrate-constructions_files/figure-html/disk-1.png
docs/articles/illustrate-constructions_files/figure-html/disk-1skeleton-1.png
docs/articles/illustrate-constructions_files/figure-html/during-1.png
docs/articles/illustrate-constructions_files/figure-html/during-2.png
docs/articles/illustrate-constructions_files/figure-html/during-3.png
docs/articles/illustrate-constructions_files/figure-html/during-4.png
docs/articles/illustrate-constructions_files/figure-html/phom-1.png
docs/articles/illustrate-constructions_files/figure-html/phom-2.png
docs/articles/illustrate-constructions_files/figure-html/plots-1.png
docs/articles/illustrate-constructions_files/figure-html/plots-2.png
docs/articles/index.html
docs/articles/phom.html
docs/articles/phom_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/phom_files/anchor-sections-1.0/anchor-sections.css
docs/articles/phom_files/anchor-sections-1.0/anchor-sections.js
docs/articles/phom_files/figure-html/annulus-scatter-1.png
docs/articles/phom_files/figure-html/barcode-1.png
docs/articles/phom_files/figure-html/diagadjust-1.png
docs/articles/phom_files/figure-html/diagonal diagram-1.png
docs/articles/phom_files/figure-html/flat diagram-1.png
docs/articles/phom_files/figure-html/flatpersist-1.png
docs/articles/phom_files/figure-html/manifold sample pairs-1.png
docs/articles/simplicial.html
docs/articles/simplicial_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/simplicial_files/anchor-sections-1.0/anchor-sections.css
docs/articles/simplicial_files/anchor-sections-1.0/anchor-sections.js
docs/articles/simplicial_files/figure-html/after-1.png
docs/articles/simplicial_files/figure-html/after-2.png
docs/articles/simplicial_files/figure-html/after-3.png
docs/articles/simplicial_files/figure-html/after-4.png
docs/articles/simplicial_files/figure-html/before-1.png
docs/articles/simplicial_files/figure-html/before-2.png
docs/articles/simplicial_files/figure-html/before-3.png
docs/articles/simplicial_files/figure-html/before-4.png
docs/articles/simplicial_files/figure-html/cech-1.png
docs/articles/simplicial_files/figure-html/cech-2.png
docs/articles/simplicial_files/figure-html/cech-3.png
docs/articles/simplicial_files/figure-html/clutter-1.png
docs/articles/simplicial_files/figure-html/disk-1.png
docs/articles/simplicial_files/figure-html/during-1.png
docs/articles/simplicial_files/figure-html/during-2.png
docs/articles/simplicial_files/figure-html/during-3.png
docs/articles/simplicial_files/figure-html/during-4.png
docs/articles/simplicial_files/figure-html/phom-1.png
docs/articles/simplicial_files/figure-html/phom-2.png
docs/articles/simplicial_files/figure-html/plots-1.png
docs/articles/simplicial_files/figure-html/plots-2.png
docs/articles/simplicial_files/figure-html/vietoris0-1.png
docs/articles/simplicial_files/figure-html/vietoris1-1.png
docs/articles/simplicial_files/figure-html/vietoris1-2.png
docs/articles/simplicial_files/figure-html/vietoris1-disk-1.png
docs/articles/simplicial_files/figure-html/vietoris2-1.png
docs/articles/simplicial_files/figure-html/vietoris2-2.png
docs/articles/visualize-persistence.html
docs/articles/visualize-persistence_files/figure-html/barcode-1.png
docs/articles/visualize-persistence_files/figure-html/diagonal diagram-1.png
docs/articles/visualize-persistence_files/figure-html/flat diagram-1.png
docs/articles/visualize-persistence_files/figure-html/manifold sample pairs-1.png
docs/articles/visualize-persistence_files/figure-html/persistence landscape-1.png
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/Rplot002.png
docs/reference/Rplot003.png
docs/reference/Rplot004.png
docs/reference/Rplot005.png
docs/reference/Rplot006.png
docs/reference/Rplot007.png
docs/reference/Rplot008.png
docs/reference/Rplot009.png
docs/reference/Rplot010.png
docs/reference/Rplot011.png
docs/reference/Rplot012.png
docs/reference/Rplot013.png
docs/reference/Rplot014.png
docs/reference/Rplot015.png
docs/reference/annulus2d.html
docs/reference/barcode-1.png
docs/reference/barcode-2.png
docs/reference/barcode-3.png
docs/reference/barcode.html
docs/reference/disk-1.png
docs/reference/disk-2.png
docs/reference/disk-3.png
docs/reference/disk-4.png
docs/reference/disk.html
docs/reference/draw_key-1.png
docs/reference/draw_key-2.png
docs/reference/draw_key.html
docs/reference/figures/README-unnamed-chunk-10-1.png
docs/reference/figures/README-unnamed-chunk-11-1.png
docs/reference/figures/README-unnamed-chunk-2-1.png
docs/reference/figures/README-unnamed-chunk-2-2.png
docs/reference/figures/README-unnamed-chunk-3-1.png
docs/reference/figures/README-unnamed-chunk-4-1.png
docs/reference/figures/README-unnamed-chunk-5-1.png
docs/reference/figures/README-unnamed-chunk-6-1.png
docs/reference/figures/README-unnamed-chunk-8-1.png
docs/reference/figures/README-unnamed-chunk-9-1.png
docs/reference/figures/Small-Clouds.gif
docs/reference/ggtda-ggproto.html
docs/reference/ggtda.html
docs/reference/index.html
docs/reference/landscape-1.png
docs/reference/landscape-2.png
docs/reference/landscape-3.png
docs/reference/landscape-4.png
docs/reference/landscape-5.png
docs/reference/landscape-6.png
docs/reference/landscape.html
docs/reference/persistence-1.png
docs/reference/persistence-2.png
docs/reference/persistence-3.png
docs/reference/persistence-4.png
docs/reference/persistence-5.png
docs/reference/persistence-6.png
docs/reference/persistence-7.png
docs/reference/persistence-8.png
docs/reference/persistence.html
docs/reference/simplicial-complex-1.png
docs/reference/simplicial-complex-2.png
docs/reference/simplicial-complex-3.png
docs/reference/simplicial-complex-4.png
docs/reference/simplicial-complex-5.png
docs/reference/simplicial-complex-6.png
docs/reference/simplicial-complex-7.png
docs/reference/simplicial-complex.html
docs/reference/simplicial_complex-1.png
docs/reference/simplicial_complex-10.png
docs/reference/simplicial_complex-11.png
docs/reference/simplicial_complex-12.png
docs/reference/simplicial_complex-13.png
docs/reference/simplicial_complex-14.png
docs/reference/simplicial_complex-15.png
docs/reference/simplicial_complex-2.png
docs/reference/simplicial_complex-3.png
docs/reference/simplicial_complex-4.png
docs/reference/simplicial_complex-5.png
docs/reference/simplicial_complex-6.png
docs/reference/simplicial_complex-7.png
docs/reference/simplicial_complex-8.png
docs/reference/simplicial_complex-9.png
docs/reference/simplicial_complex.html
docs/reference/theme_barcode.html
docs/reference/theme_persist.html
docs/reference/themes.html
docs/sitemap.xml
ggtda.Rproj
inst/examples/ex-barcode.R
inst/examples/ex-disk-simplicial-complex.R
inst/examples/ex-disk.R
inst/examples/ex-draw-key-simplex.R
inst/examples/ex-landscape.R
inst/examples/ex-persistence-dataset.R
inst/examples/ex-persistence-extended.R
inst/examples/ex-persistence.R
inst/examples/ex-simplicial-complex.R
man-roxygen/persistence-data.r
man-roxygen/ref-bubenik2015.r
man-roxygen/ref-carlsson2004.r
man-roxygen/ref-carlsson2014.r
man-roxygen/ref-chazal2017.r
man-roxygen/ref-chung2020.r
man-roxygen/ref-edelsbrunner2000.r
man-roxygen/ref-edelsbrunner2012.r
man/barcode.Rd
man/disk.Rd
man/draw_key.Rd
man/figures/README-unnamed-chunk-10-1.png
man/figures/README-unnamed-chunk-11-1.png
man/figures/README-unnamed-chunk-3-1.png
man/figures/README-unnamed-chunk-4-1.png
man/figures/README-unnamed-chunk-5-1.png
man/figures/README-unnamed-chunk-6-1.png
man/figures/README-unnamed-chunk-8-1.png
man/figures/README-unnamed-chunk-9-1.png
man/figures/Small-Clouds.gif
man/ggtda-ggproto.Rd
man/ggtda.Rd
man/landscape.Rd
man/persistence.Rd
man/simplicial_complex.Rd
man/themes.Rd
sandbox/persistence-engines.R
tests/testthat.R
tests/testthat/_snaps/barcode/geom-barcode-start-end.svg
tests/testthat/_snaps/persistence/stat-persistence-diagonal.svg
tests/testthat/_snaps/persistence/stat-persistence-flat.svg
tests/testthat/_snaps/persistence/stat-persistence-landscape.svg
tests/testthat/_snaps/simplicial-complex/geom-disk-annulus.svg
tests/testthat/_snaps/simplicial-complex/stat-simplicial-complex-cech-0.svg
tests/testthat/_snaps/simplicial-complex/stat-simplicial-complex-cech-1.svg
tests/testthat/_snaps/simplicial-complex/stat-simplicial-complex-cech-2.svg
tests/testthat/_snaps/simplicial-complex/stat-simplicial-complex-vietoris-0.svg
tests/testthat/_snaps/simplicial-complex/stat-simplicial-complex-vietoris-1.svg
tests/testthat/_snaps/simplicial-complex/stat-simplicial-complex-vietoris-2.svg
tests/testthat/_snaps/theme/theme-barcode-barcode-vertical.svg
tests/testthat/_snaps/theme/theme-barcode-barcode.svg
tests/testthat/_snaps/theme/theme-persist-persistence.svg
tests/testthat/test-barcode.R
tests/testthat/test-draw-key-simplex.R
tests/testthat/test-persistence-engines.R
tests/testthat/test-persistence.R
tests/testthat/test-simplicial-complex-engines.R
tests/testthat/test-simplicial-complex-equilateral.R
tests/testthat/test-simplicial-complex.R
tests/testthat/test-theme.R
vignettes/.gitignore
vignettes/ggtda.bib
vignettes/grouped-list-data.Rmd
vignettes/grouped-list-data_cache/html/__packages
vignettes/grouped-list-data_cache/html/unnamed-chunk-2_c0551f47c2f7267ed0c4c2b9500b3359.RData
vignettes/grouped-list-data_cache/html/unnamed-chunk-2_c0551f47c2f7267ed0c4c2b9500b3359.rdb
vignettes/grouped-list-data_cache/html/unnamed-chunk-2_c0551f47c2f7267ed0c4c2b9500b3359.rdx
vignettes/grouped-list-data_files/figure-html/unnamed-chunk-11-1.png
vignettes/grouped-list-data_files/figure-html/unnamed-chunk-12-1.png
vignettes/grouped-list-data_files/figure-html/unnamed-chunk-2-1.png
vignettes/grouped-list-data_files/figure-html/unnamed-chunk-3-1.png
vignettes/grouped-list-data_files/figure-html/unnamed-chunk-4-1.png
vignettes/grouped-list-data_files/figure-html/unnamed-chunk-5-1.png
vignettes/grouped-list-data_files/figure-html/unnamed-chunk-6-1.png
vignettes/grouped-list-data_files/figure-html/unnamed-chunk-7-1.png
vignettes/grouped-list-data_files/figure-html/unnamed-chunk-8-1.png
vignettes/grouped-list-data_files/figure-html/unnamed-chunk-9-1.png
vignettes/illustrate-constructions.Rmd
vignettes/visualize-persistence.Rmd
