DAISIE_plot_stt: Create the Species-Through-Time plot. This is used to...

In rsetienne/DAISIE: Dynamical Assembly of Islands by Speciation, Immigration and Extinction

Create the Species-Through-Time plot. This is used to visualize the output of DAISIE_sim functions

Description

Create the Species-Through-Time plot. This is used to visualize the output of DAISIE_sim functions

Usage

DAISIE_plot_stt(
  plot_plus_one = TRUE,
  time,
  plot_lists = plot_lists,
  type = type
)

Arguments

plot_plus_one	Boolean to indicate to plot all values plus one. Set to TRUE for default behavior. Set to FALSE to plot all values without adding one. Only works when there is one type of species.
time	Numeric defining the length of the simulation in time units. For example, if an island is known to be 4 million years old, setting time = 4 will simulate the entire life span of the island; setting time = 2 will stop the simulation at the mid-life of the island.
plot_lists	List of lists containing average and quantile species through time.
type	String to indicate if stt of all species or all possible stt should be plotted. Default is "all_species", "type1_species" or "type2_species" should be plotted.

rsetienne/DAISIE documentation built on Oct. 25, 2023, 4:32 a.m.