Files in ruffleymr/CAMI
Identify models of community assembly using ABC and randomForest algorithms
.DS_Store
.Rbuildignore
.gitignore
CAMI.Rproj
DESCRIPTION
NAMESPACE
R/.Rapp.history
R/.Rproj.user/2300E381/cpp-definition-cache
R/.Rproj.user/2300E381/pcs/files-pane.pper
R/.Rproj.user/2300E381/pcs/source-pane.pper
R/.Rproj.user/2300E381/pcs/windowlayoutstate.pper
R/.Rproj.user/2300E381/pcs/workbench-pane.pper
R/.Rproj.user/2300E381/rmd-outputs
R/.Rproj.user/2300E381/saved_source_markers
R/.Rproj.user/2300E381/session-persistent-state
R/Functions.R
README.md
data/.DS_Store
data/EmpiricalData/BMcomp.dataEmp.Rdata
data/EmpiricalData/BMfilt.dataEmp.Rdata
data/EmpiricalData/BMneutral.dataEmp.Rdata
data/EmpiricalData/Kipuka_LocalTraits.Rdata
data/EmpiricalData/Kipuka_LocalTree.Rdata
data/EmpiricalData/Kipuka_RegTraits.Rdata
data/EmpiricalData/Kipuka_RegTree.Rdata
data/EmpiricalData/OU.filtering.data.emp.100000.Rdata
data/EmpiricalData/OUcomp.dataEmp.Rdata
data/EmpiricalData/OUfilt.dataEmp.Rdata
data/EmpiricalData/OUneutral.dataEmp.Rdata
data/Marx_Data/.DS_Store
data/Marx_Data/CommunityDataMatrix.csv
data/Marx_Data/FunctionalTraitData.csv
data/Marx_Data/Marx.tre
data/MultiCommunityAnalysis/.DS_Store
data/MultiCommunityAnalysis/Kipukas/KipComm_Matrix.csv
data/MultiCommunityAnalysis/Kipukas/KipComm_Matrix.xlsx
data/MultiCommunityAnalysis/Kipukas/KipComm_Matrix_edited.csv
data/MultiCommunityAnalysis/Kipukas/TauMedEstimates_8Kipukas.Rdata
data/ParameterEstimation/BM/competition/RefDataset.CompBig.Rdata
data/ParameterEstimation/BM/competition/RefDataset.CompSmall.Rdata
data/ParameterEstimation/BM/competition/Results.C.b.Rdata
data/ParameterEstimation/BM/competition/Results.C.s.Rdata
data/ParameterEstimation/BM/competition/Results.Comp.sb.Rdata
data/ParameterEstimation/BM/filtering/RefDataset.FiltBig.Rdata
data/ParameterEstimation/BM/filtering/RefDataset.FiltSmall.Rdata
data/ParameterEstimation/BM/filtering/Results.F.b.Rdata
data/ParameterEstimation/BM/filtering/Results.F.s.Rdata
data/ParameterEstimation/BM/filtering/Results.Filt.sb.Rdata
data/ParameterEstimation/OU/competition/RefDataset.CompBig.Rdata
data/ParameterEstimation/OU/competition/RefDataset.CompSmall.Rdata
data/ParameterEstimation/OU/competition/Results.C.b.Rdata
data/ParameterEstimation/OU/competition/Results.C.s.Rdata
data/ParameterEstimation/OU/competition/Results.Comp.sb.Rdata
data/ParameterEstimation/OU/filtering/.DS_Store
data/ParameterEstimation/OU/filtering/RefDataset.FiltBig.Rdata
data/ParameterEstimation/OU/filtering/RefDataset.FiltSmall.Rdata
data/ParameterEstimation/OU/filtering/Results.F.b.Rdata
data/ParameterEstimation/OU/filtering/Results.F.s.Rdata
data/ParameterEstimation/OU/filtering/Results.Filt.sb.Rdata
data/PhyDispData/PhyDispError.Rdata
data/PhyDispData/SimOutput_PhyDisp.Rdata
data/PowerAnalysis/.DS_Store
data/PowerAnalysis/ABC.Power.Rdata
data/PowerAnalysis/ABC.Power_2.Rdata
data/PowerAnalysis/RF.ErrRates.Rdata
data/PowerAnalysis/RF.ErrRates_2.Rdata
data/PowerAnalysis/SimOutput_PwrAnalysis.Rdata
man/CalcPhyDispStats.Rd
man/CalcSummaryStats.Rd
man/SimCommunityAssembly.Rd
vignettes/.DS_Store
vignettes/.Rhistory
vignettes/CAMI_1.Rmd
vignettes/CAMI_1.html
vignettes/CAMI_EmpiricalAnalysis.Rmd
vignettes/CAMI_EmpiricalAnalysis_MultipleKipukas.Rmd
vignettes/CAMI_Installation.Rmd
vignettes/CAMI_Installation.html
vignettes/CAMI_ParameterEstimation.Rmd
vignettes/CAMI_PowerAnalysis.Rmd
vignettes/CAMI_SanJuanAnalysis.Rmd
