Description Usage Arguments Value
SimCommunityAssembly
1 2 3 4 |
sims: |
The number of simulations; sims |
N: |
The size of the regional communities, can be a single number or a prior range |
local: |
size of the local communities, can be a single number, a proportion of the regional pool (btw 0 and 1), or a prior range of proportions |
traitsim: |
either 'BM' or 'OU' |
comsim: |
either "netural", "filtering", "competition", "all" |
lambda: |
speciation rate, can be single number or prior range, default is a uniform prior between 0.5 and 2.0 |
eps: |
the extinction fraction, extinction (mu) = lambda * eps, default is a uniform prior between 0.2 and 0.8 |
sig2: |
rate of character change, can be single value or prior range, defualt is a unifom prior range between 1.0 and 10.0 |
alpha: |
pull to trait optimum, defualt is a uniform prior range between 0.01 and 0.2 |
tau: |
stregnth of the community assembly model, default is a uniform prior range between 1.0 and 5.0 |
A list of two matrices, one containing all parameter values for each simulation, and the other containing all summary statistics. In both matrices, each row corresponds to one simulation
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