MicroarrayDownloadConfig: Sets up a class for storing the options for downloading...

In russHyde/miiq: Microarrays Are Awesome: Get Them Analysed HERE!

Description

Sets up a class for storing the options for downloading datasets from GEO and/or ArrayExpress

Usage

MicroarrayDownloadConfig(acc, database, download_method,
  dest_dir = tempdir(), gpl_acc = as.character(NA), annot_gpl)

Arguments

acc	An accession number for use at GEO or ArrayExpress.
database	The name of the database from which the dataset should be downloaded.
download_method	Either a function (or the name of a function) for downloading the required dataset.
dest_dir	The directory within which the dataset should be saved.
gpl_acc	The accession number for any relevant GPL annotation data from GEO.
annot_gpl	Should the NCBI-embellished platform annotation data be downloaded?

russHyde/miiq documentation built on Dec. 25, 2019, 10:56 a.m.