| calcparafun | Calculating global parameters |
| calc_TApos | Map TA sites onto corresponding genes |
| callessfun | Identify essential genes using calculated parameters |
| denote_coreTA | Identify core TA sites based on TA location |
| find_homo | Find homologous TA sites from raw tally file |
| FiTnEss_function | Run FiTnEss |
| import_raw_tally | Import raw tally file for processing |
| jointfun | Construct distribution using different parameter combinations |
| my_cvm | Modified version of CVM function from package goftest |
| self_tallyprepfun | Preparing usable tally files from raw data |
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