find_homo: Find homologous TA sites from raw tally file

In ruy204/FiTnEss: FiTnEss: Finding TnSeq Essential Genes

Description

This function helps identify homologous TA sites from raw tally file.

Usage

find_homo(tally,homofile)

Arguments

tally	raw tally file, path and name of tally file for run, e.g. '/home/your_folder/your_tally.txt'
homofile	path and name of homologous marker file generated from genomic pre-processing step

Examples

find_homo("/home/TnSeq/data/test_data/PA14_M9_rep1_tally.txt",
          "/home/TnSeq/data/test_data/homologous_TA_sites.txt")


{ ~homologous }

ruy204/FiTnEss documentation built on Jan. 23, 2021, 2:52 a.m.