callessfun: Identify essential genes using calculated parameters

In ruy204/FiTnEss: FiTnEss: Finding TnSeq Essential Genes

Description

Call essential genes based on calculated parameters from function calcparafun

Usage

callessfun(file_location,usable_tally_list,parameter_list)

Arguments

file_location	full path of all raw tally files, replicates are separated by "," without space
usable_tally_list	output of self_tallyprepfun, usable tally files that prepared using raw tally and supporting files
parameter_list	output parameter value from calcparafun function. Optimized parameters are used to construct null distribution.

Details

This function constructs potential non-essential distribution using calculated parameters, and calculate p-value for each gene to identify essential genes.

Examples

callessfun("/home/TnSeq/data/test_data/PA14_M9_rep1_tally.txt",
           usable_tally,parameter_list)

ruy204/FiTnEss documentation built on Jan. 23, 2021, 2:52 a.m.