calc_TApos: Map TA sites onto corresponding genes

In ruy204/FiTnEss: FiTnEss: Finding TnSeq Essential Genes

Description

This function is part of the tallyprepfun function, which pre-process raw tally file for analysis.

In this step, the function uses raw tally .txt file (imported from function import_raw_tally) and genelist file (internal data called from function tallyprepfun) to map TA sites into corresponding genes.

Usage

calc_TApos(tally,genelist)

Arguments

tally	raw tally.txt file that imported from import_raw_tally function
genelist	internal data in the package, strain-specific, containing gene name, TA site positions of each gene

Examples

calc_TApos(unique_map_tally_file,genelist)

ruy204/FiTnEss documentation built on Jan. 23, 2021, 2:52 a.m.