denote_coreTA: Identify core TA sites based on TA location

In ruy204/FiTnEss: FiTnEss: Finding TnSeq Essential Genes

Description

Identify core TA sites, and mark TA sites that locate within 50bp of gene ends.

Usage

denote_coreTA(tally,bp=50)

Arguments

tally	raw tally file, path and name of tally file for run, e.g. '/home/your_folder/your_tally.txt'
bp	define core TA sites by defining distance from gene ends, default is 50bp

Examples

denote_coreTA("/home/TnSeq/data/test_data/PA14_M9_rep1_tally.txt",
              50bp)

ruy204/FiTnEss documentation built on Jan. 23, 2021, 2:52 a.m.