merge.HiCcomparator: Finds regions, which interacts in both experiments (maps).

In rz6/CopulaHiC: Hi-C differential analysis via dependency modelling of chromatin interactions with generalized linear models

Description

Merges Hi-C contact maps data frames 1 and 2 of HiCcomparator object by i, j, diagonal, name columns.

Usage

## S3 method for class 'HiCcomparator'
merge(x, include.zero.cells = FALSE)

Arguments

x	HiCcomparator object
include.zero.cells	logical, whether to include cells, which have non zero number of contacts in one map, but not the other, not recommended

Value

list of data frames with merged contact maps data in sparse format

See Also

HiCcomparator on how to construct HiCcomparator object

Examples

# first create HiCcomparator object - see ?HiCcomparator for examples
merged <- merge(hic.comparator)

rz6/CopulaHiC documentation built on Dec. 31, 2019, 9:19 a.m.