save_npz: Saves list with dense matrices to npz compressed file.
In rz6/CopulaHiC: Hi-C differential analysis via dependency modelling of chromatin interactions with generalized linear models
Description
Usage
Arguments
Value
See Also
Examples
Description
Saves list with dense matrices to npz compressed file.
Usage
1
save_npz(mtx.list, path)
Arguments
mtx.list
list containg dense matrices, list should have names
path
character string specifying path together with filename to save matrices
Value
None
See Also
https://docs.scipy.org/doc/numpy-1.15.0/reference/generated/numpy.savez_compressed.html for python numpy method used to save matrices in npz compressed file
Examples
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# get sample npz file name
mtx.fname <- system.file("extdata", "MSC-HindIII-1_40kb-raw.npz", package = "DIADEM", mustWork = TRUE)
mtx.dense.sublist <- read_dense(mtx.fname, mtx.names = c("18","19"))
print(names(mtx.dense.sublist))
print(typeof(mtx.dense.sublist))
print(typeof(mtx.dense.sublist[["18"]]))
print(dim(mtx.dense.sublist[["18"]]))
# save
save_npz(mtx.dense.sublist, "example.npz")
rz6/CopulaHiC documentation built on Dec. 31, 2019, 9:19 a.m.
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Description Usage Arguments Value See Also Examples
Description
Saves list with dense matrices to npz compressed file.
Usage
1 | save_npz(mtx.list, path)
|
Arguments
mtx.list |
list containg dense matrices, list should have names |
path |
character string specifying path together with filename to save matrices |
Value
None
See Also
https://docs.scipy.org/doc/numpy-1.15.0/reference/generated/numpy.savez_compressed.html for python numpy method used to save matrices in npz compressed file
Examples
1 2 3 4 5 6 7 8 9 | # get sample npz file name
mtx.fname <- system.file("extdata", "MSC-HindIII-1_40kb-raw.npz", package = "DIADEM", mustWork = TRUE)
mtx.dense.sublist <- read_dense(mtx.fname, mtx.names = c("18","19"))
print(names(mtx.dense.sublist))
print(typeof(mtx.dense.sublist))
print(typeof(mtx.dense.sublist[["18"]]))
print(dim(mtx.dense.sublist[["18"]]))
# save
save_npz(mtx.dense.sublist, "example.npz")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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